cwl_utils.tests.test_etools_to_clt

Test the CWL Expression refactoring tool.

Functions

test_v1_0_workflow_top_level_format_expr()	Test for the correct error when converting a format expression in a workflow level input.
test_v1_0_workflow_top_level_sf_expr()	Test for the correct error when converting a secondaryFiles expression in a workflow level input.
test_v1_0_workflow_top_level_sf_expr_array()	Test correct error when converting a secondaryFiles expression (array form) in a workflow level input.
test_v1_1_workflow_top_level_format_expr()	Test for the correct error when converting a format expression in a workflow level input.
test_v1_1_workflow_top_level_sf_expr()	Test for the correct error when converting a secondaryFiles expression in a workflow level input.
test_v1_1_workflow_top_level_sf_expr_array()	Test for the correct error when converting a secondaryFiles expression (array form) in a workflow level input.
test_v1_2_workflow_top_level_format_expr()	Test for the correct error when converting a format expression in a workflow level input.
test_v1_2_workflow_top_level_sf_expr()	Test for the correct error when converting a secondaryFiles expression in a workflow level input.
test_v1_2_workflow_top_level_sf_expr_array()	Test for the correct error when converting a secondaryFiles expression (array form) in a workflow level input.
test_v1_0_step_valuefrom_expr_multisource()	Convert a valueFrom expression that has multiple sources.
test_v1_1_step_valuefrom_expr_multisource()	Convert a valueFrom expression that has multiple sources.
test_v1_2_step_valuefrom_expr_multisource()	Convert a valueFrom expression that has multiple sources.
test_v1_0_step_valuefrom_expr_sibling_inputs()	Convert a valueFrom expression from a step input that has uninvolved sibling inputs.
test_v1_1_step_valuefrom_expr_sibling_inputs()	Convert a valueFrom expression from a step input that has uninvolved sibling inputs.
test_v1_2_step_valuefrom_expr_sibling_inputs()	Convert a valueFrom expression from a step input that has uninvolved sibling inputs.
test_v1_2_workflow_output_pickvalue_expr()	Convert a workflow output pickValue expression.
test_expression_refactor(tmp_path)	Functional test.
test_expression_refactor_noop_solo(tmp_path)	Functional test.
test_expression_refactor_noop(tmp_path)	Functional test.
cwl_v1_0_dir(tmp_path_factory)	Download the CWL 1.0.2 specs and return a path to the directory.

Module Contents

cwl_utils.tests.test_etools_to_clt.test_v1_0_workflow_top_level_format_expr()

Test for the correct error when converting a format expression in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_0_workflow_top_level_sf_expr()

Test for the correct error when converting a secondaryFiles expression in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_0_workflow_top_level_sf_expr_array()

Test correct error when converting a secondaryFiles expression (array form) in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_1_workflow_top_level_format_expr()

Test for the correct error when converting a format expression in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_1_workflow_top_level_sf_expr()

Test for the correct error when converting a secondaryFiles expression in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_1_workflow_top_level_sf_expr_array()

Test for the correct error when converting a secondaryFiles expression (array form) in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_2_workflow_top_level_format_expr()

Test for the correct error when converting a format expression in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_2_workflow_top_level_sf_expr()

Test for the correct error when converting a secondaryFiles expression in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_2_workflow_top_level_sf_expr_array()

Test for the correct error when converting a secondaryFiles expression (array form) in a workflow level input.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_0_step_valuefrom_expr_multisource()

Convert a valueFrom expression that has multiple sources.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_1_step_valuefrom_expr_multisource()

Convert a valueFrom expression that has multiple sources.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_2_step_valuefrom_expr_multisource()

Convert a valueFrom expression that has multiple sources.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_0_step_valuefrom_expr_sibling_inputs()

Convert a valueFrom expression from a step input that has uninvolved sibling inputs.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_1_step_valuefrom_expr_sibling_inputs()

Convert a valueFrom expression from a step input that has uninvolved sibling inputs.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_2_step_valuefrom_expr_sibling_inputs()

Convert a valueFrom expression from a step input that has uninvolved sibling inputs.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_v1_2_workflow_output_pickvalue_expr()

Convert a workflow output pickValue expression.

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_expression_refactor(tmp_path)

Functional test.

Parameters:

tmp_path (pathlib.Path)

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_expression_refactor_noop_solo(tmp_path)

Functional test.

Parameters:

tmp_path (pathlib.Path)

Return type:

None

cwl_utils.tests.test_etools_to_clt.test_expression_refactor_noop(tmp_path)

Functional test.

Parameters:

tmp_path (pathlib.Path)

Return type:

None

cwl_utils.tests.test_etools_to_clt.cwl_v1_0_dir(tmp_path_factory)

Download the CWL 1.0.2 specs and return a path to the directory.

Parameters:

tmp_path_factory (_pytest.tmpdir.TempPathFactory)

Return type:

collections.abc.Generator[str, None, None]